| Program name | Description |
|---|
| biosed |
Replace or delete sequence sections
|
| cutseq |
Removes a specified section from a sequence
|
| degapseq |
Removes gap characters from sequences
|
| descseq |
Alter the name or description of a sequence
|
| entret |
Reads and writes (returns) flatfile entries
|
| extractfeat |
Extract features from a sequence
|
| extractseq |
Extract regions from a sequence
|
| listor |
Writes a list file of the logical OR of two sets of sequences
|
| maskfeat |
Mask off features of a sequence
|
| maskseq |
Mask off regions of a sequence
|
| newseq |
Type in a short new sequence
|
| noreturn |
Removes carriage return from ASCII files
|
| notseq |
Excludes a set of sequences and writes out the remaining ones
|
| nthseq |
Writes one sequence from a multiple set of sequences
|
| pasteseq |
Insert one sequence into another
|
| revseq |
Reverse and complement a sequence
|
| seqret |
Reads and writes (returns) sequences
|
| seqretsplit |
Reads and writes (returns) sequences in individual files
|
| skipseq |
Reads and writes (returns) sequences, skipping the first few
|
| splitter |
Split a sequence into (overlapping) smaller sequences
|
| trimest |
Trim poly-A tails off EST sequences
|
| trimseq |
Trim ambiguous bits off the ends of sequences
|
| union |
Reads sequence fragments and builds one sequence
|
| vectorstrip |
Strips out DNA between a pair of vector sequences
|
| yank |
Reads a sequence range, appends the full USA to a list file
|
