unix % pscan
Scans proteins using PRINTS
Input sequence: xlrhodop.pep
Minimum number of elements per fingerprint [2]:
Maximum number of elements per fingerprint [20]:
Output file [xlrhodop_1.pscan]: xlrhodop.pscan
Scanning XLRHODOP+1...
unix % more xlrhodop.pscan
CLASS 1
Fingerprints with all elements in order
Fingerprint GPCRRHODOPSN Elements 7
Accession number PR00237
Rhodopsin-like GPCR superfamily signature
Element 1 Threshold 54% Score 61%
Start position 39 Length 25
Element 2 Threshold 49% Score 49%
Start position 72 Length 22
Element 3 Threshold 48% Score 55%
Start position 117 Length 23
Element 4 Threshold 50% Score 69%
Start position 152 Length 22
Element 5 Threshold 51% Score 82%
Start position 204 Length 24
Element 6 Threshold 42% Score 72%
Start position 250 Length 25
Element 7 Threshold 46% Score 68%
Start position 288 Length 27
CLASS 2
All elements match but not all in the correct order
Fingerprint RHODOPSIN Elements 6
Accession number PR00579
Rhodopsin signature
Element 1 Threshold 80% Score 100%
Start position 3 Length 19
Element 2 Threshold 76% Score 94%
Start position 22 Length 17
Element 3 Threshold 53% Score 90%
Start position 85 Length 17
Element 4 Threshold 71% Score 100%
Start position 191 Length 17
Element 5 Threshold 56% Score 97%
Start position 271 Length 19
Element 6 Threshold 81% Score 95%
Start position 319 Length 14
CLASS 3
Not all elements match but those that do are in order
CLASS 4
Remaining partial matches