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Web-based Bioinformatics analysis- A road map
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| Entry Points and General Resources |
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| EBI: |
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The EMBL - European Bioinformatics Institute (EBI) is a centre for research and services in bioinformatics. The Institute manages databases of biological data including nucleic acid, protein sequences and macromolecular structures.
http://www.ebi.ac.uk |
NCBI: |
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What does NCBI do?
Established in 1988 as a national resource for molecular biology information, NCBI creates public
databases, conducts research in computational biology, develops software tools for analyzing genome data, and disseminates biomedical information - all for the better understanding of molecular processes affecting human health and disease
http://www.ncbi.nlm.nih.gov/ |
The Sanger Center: |
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The Sanger Centre is a genome research centre founded by the Wellcome Trust and the Medical
Research Council. Our purpose is to further the knowledge of genomes, particularly through large scale sequencing and analysis.
http://www.sanger.ac.uk/ |
KEGG Kyoto Encyclopedia of Genes and Genomes |
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Search and compute with KEGG
http://www.genome.ad.jp/kegg/kegg3.html |
ExPASy Molecular Biology Server |
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the ExPASy (Expert Protein Analysis System) proteomics server of the Swiss Institute of Bioinformatics (SIB). This server is dedicated to the analysis of protein sequences and structures as well as 2-D PAGE
http://www.expasy.ch/ |
WWW Virtual Library, Biology Division |
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A searchable collection of biology links maintained by Harvard Biological Laboratories.
http://mcb.harvard.edu/BioLinks.html |
WWW Virtual Library, Genetics Subdivision |
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Links specific to molecular biology and genetics, maintained by Oak Ridge National Laboratory.
http://www.ornl.gov/TechResources/Human_Genome/genetics.html |
EMBnet |
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EMBnet is a science-based group of collaborating nodes throughout Europe and a number of nodes outside Europe.
The combined expertise of the nodes allows EMBnet to provide services to the European molecular biology community which encompasses more than can be provided by a single node.
http://www.embnet.org |
GDB Mapping Resources Pages |
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Complete list of genome centers and model organism sites. May not be updated after June 1998.
http://gdbwww.gdb.org/gdb/hgpResources.html |
Pour les francophones parmis vous mes amies |
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http://bioweb.pasteur.fr/ |
| If you have a name and you want to find a sequence: |
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| If you have a sequence and you want to find its name: |
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| The NCBI BLAST server |
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Sequence homology searching.
http://www.ncbi.nlm.nih.gov/BLAST/ |
Sanger Centre: H. sapiens, S. cerevisiae, S. pombe, C. elegans, P. falciparum, M. leprae.... |
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Multiple organisms in various stages of sequencing at the Sanger Center.
http://www.sanger.ac.uk/DataSearch/ |
Washington University: C elegans, C. briggsae, A. thaliana, H. sapiens |
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Multiple organisms in various stages of sequencing at Wash U.
http://genome.wustl.edu/gsc/gschmpg.html |
Stanford: A. thaliana |
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BLAST server for various Arabidopsis extracts from GenBank.
http://arabidopsis.org/blast/ |
EBI
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Here the user will be able to use various sequence database similarity search tools such as Fasta, Blast, MPsrch and Scanps. Interactive as well as email submissions are available for each of these services.
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http://www.ebi.ac.uk/Tools/similarity.html
http://www.ebi.ac.uk/fasta3/
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| Got a Sequence and you want to know eg., its coding region, exon/intron organisation? |
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rVISTA : Vista combines database searches with comparative sequence analysis, reducing the number of false positive predictions by ~95% while maintaining a high sensitivity of the search.
http://rvista.dcode.org/
| Got a Sequence: do you want to place it on its right environment? |
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( To the top)
| Exploiting the human genome resources |
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| If you want to find tissue specific Expression |
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| Got a Sequence: is this result already published? |
PubMed |
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Bibliographic retrieval system, maintained by NCBI. Well-integrated into net Entrez.
http://www.ncbi.nlm.nih.gov/PubMed/ |
| You want to build up your own workbench in bioinformatics? |
| This a list of links to get information on free available tools and download places. |
( To the top)
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