chromosome 2
50400 bytes allocated in orders_morecore
3024000 bytes allocated in morecore
Option chosen: build
Current values for parameters:
par_file = chr2.par
dat_file = chr2.dat
gen_file = chr2.gen
ord_file = chr2.ord
nb_our_alloc = 3000000 [# bytes reserved for our_alloc]
SEX_EQ = 1 [0 = sex specific analysis, 1 = sex equal]
TOL = 0.010000
PUK_NUM_ORDERS_TOL = 6
PK_NUM_ORDERS_TOL = 8
PUK_LIKE_TOL = 3.000
PK_LIKE_TOL = 3.000
use_ord_file = 1
write_ord_file = 1
use_haps = 1
1 D2S54
5 ACP1
33 D2S62
44 TPO
50 D2S70
56 D2S48
59 D2S45
64 D2S61_2
65 D2S47
66 D2S6
67 D2S49
68 D2S44
69 D2S43
ordered loci:
68 65
inserted loci:
44 64 5 67 69 1 66 33 50 56 59
current orders
68 65
current orders
68 44 65
68 65 44
current orders
68 67 65 44
68 44 67 65
68 65 67 44
68 44 65 67
current orders
69 68 67 65 44
69 68 44 67 65
69 68 65 67 44
69 68 44 65 67
68 69 67 65 44
68 69 44 67 65
68 69 65 67 44
68 69 44 65 67
current orders
68 65
orders_temp
68 44 65
68 65 44
orders_temp
64 68 65
68 64 65
68 65 64
orders_temp
68 5 65
68 65 5
orders_temp
68 67 65
68 65 67
orders_temp
69 68 65
68 69 65
orders_temp
1 68 65
68 1 65
orders_temp
66 68 65
68 66 65
68 65 66
orders_temp
33 68 65
68 33 65
68 65 33
orders_temp
50 68 65
68 50 65
68 65 50
orders_temp
56 68 65
68 56 65
68 65 56
orders_temp
59 68 65
68 59 65
68 65 59
current orders
68 65
orders_temp
68 44 65
68 65 44
orders_temp
64 68 65
68 64 65
68 65 64
orders_temp
68 5 65
68 65 5
orders_temp
68 67 65
68 65 67
LOG_LIKE DECREASED IN CHANGE_THETA DIFF = -0.000000
LOG_LIKE DECREASED IN CHANGE_THETA DIFF = -0.000000
orders_temp
69 68 65
68 69 65
LOG_LIKE DECREASED IN CHANGE_THETA DIFF = -0.000000
orders_temp
1 68 65
68 1 65
LOG_LIKE DECREASED IN CHANGE_THETA DIFF = -0.000000
orders_temp
66 68 65
68 66 65
68 65 66
orders_temp
33 68 65
68 33 65
68 65 33
LOG_LIKE DECREASED IN CHANGE_THETA DIFF = -0.000000
orders_temp
50 68 65
68 50 65
68 65 50
LOG_LIKE DECREASED IN CHANGE_THETA DIFF = -0.000000
orders_temp
56 68 65
68 56 65
68 65 56
orders_temp
59 68 65
68 59 65
current orders
68 44 65
68 65 44
orders_temp
64 68 44 65
64 68 65 44
68 64 44 65
68 64 65 44
68 44 65 64
68 65 44 64
orders_temp
68 5 44 65
68 5 65 44
68 44 5 65
68 65 5 44
68 44 65 5
68 65 44 5
orders_temp
68 67 65 44
68 44 67 65
68 65 67 44
68 44 65 67
orders_temp
69 68 44 65
69 68 65 44
68 69 44 65
68 69 65 44
orders_temp
1 68 44 65
1 68 65 44
68 1 44 65
68 1 65 44
orders_temp
66 68 44 65
66 68 65 44
68 66 44 65
68 66 65 44
68 44 65 66
68 65 44 66
orders_temp
33 68 44 65
33 68 65 44
68 33 44 65
68 33 65 44
68 44 65 33
68 65 44 33
orders_temp
50 68 44 65
50 68 65 44
68 50 44 65
68 50 65 44
68 44 65 50
68 65 44 50
orders_temp
56 68 44 65
56 68 65 44
68 56 44 65
68 56 65 44
68 44 65 56
68 65 44 56
orders_temp
59 68 44 65
59 68 65 44
68 59 44 65
68 59 65 44
current orders
68 67 65 44
68 44 67 65
68 65 67 44
68 44 65 67
orders_temp
64 68 67 65 44
64 68 44 67 65
64 68 65 67 44
64 68 44 65 67
68 64 67 65 44
68 64 44 67 65
68 64 65 67 44
68 64 44 65 67
68 67 65 44 64
68 44 67 65 64
68 65 67 44 64
68 44 65 67 64
orders_temp
68 5 67 65 44
68 5 44 67 65
68 5 65 67 44
68 5 44 65 67
68 44 5 67 65
68 44 5 65 67
68 67 65 5 44
68 65 67 5 44
68 67 65 44 5
68 44 67 65 5
68 65 67 44 5
68 44 65 67 5
orders_temp
69 68 67 65 44
69 68 44 67 65
69 68 65 67 44
69 68 44 65 67
68 69 67 65 44
68 69 44 67 65
68 69 65 67 44
68 69 44 65 67
orders_temp
1 68 67 65 44
1 68 44 67 65
1 68 65 67 44
1 68 44 65 67
68 1 67 65 44
68 1 44 67 65
68 1 65 67 44
68 1 44 65 67
orders_temp
66 68 67 65 44
66 68 44 67 65
66 68 65 67 44
66 68 44 65 67
68 66 67 65 44
68 66 44 67 65
68 66 65 67 44
68 66 44 65 67
68 67 65 44 66
68 44 67 65 66
68 65 67 44 66
68 44 65 67 66
orders_temp
33 68 67 65 44
33 68 44 67 65
33 68 65 67 44
33 68 44 65 67
68 33 67 65 44
68 33 44 67 65
68 33 65 67 44
68 33 44 65 67
68 67 65 44 33
68 44 67 65 33
68 65 67 44 33
68 44 65 67 33
orders_temp
50 68 67 65 44
50 68 44 67 65
50 68 65 67 44
50 68 44 65 67
68 50 67 65 44
68 50 44 67 65
68 50 65 67 44
68 50 44 65 67
68 67 65 44 50
68 44 67 65 50
68 65 67 44 50
68 44 65 67 50
orders_temp
56 68 67 65 44
56 68 44 67 65
56 68 65 67 44
56 68 44 65 67
68 56 67 65 44
68 56 44 67 65
68 56 65 67 44
68 56 44 65 67
68 67 65 44 56
68 44 67 65 56
68 65 67 44 56
68 44 65 67 56
orders_temp
59 68 67 65 44
59 68 44 67 65
59 68 65 67 44
59 68 44 65 67
68 59 67 65 44
68 59 44 67 65
68 59 65 67 44
68 59 44 65 67
1 D2S54
5 ACP1
33 D2S62
44 TPO
50 D2S70
56 D2S48
59 D2S45
64 D2S61_2
65 D2S47
66 D2S6
67 D2S49
68 D2S44
69 D2S43
Sex_averaged map (recomb. frac., Kosambi cM):
68 D2S44 0.0
0.50 100.0
65 D2S47 100.0
* denotes recomb. frac. held fixed in this analysis
log10_like = -82.48
Sex-specific map (recomb. frac., Kosambi cM -- female, male ):
68 D2S44 0.0 0.0
0.47 83.1 0.50 100.0
65 D2S47 83.1 100.0
* denotes recomb. frac. held fixed in this analysis
log10_like = -82.38
TPO
68 65
X X
-110.11
-110.14
D2S61_2
68 65
X X X
-135.85
-135.60
-136.10
ACP1
68 65
X X
-115.94
-115.94
D2S49
68 65
X X
-111.08
-111.08
D2S43
68 65
X X
LOG_LIKE DECREASED IN CHANGE_THETA DIFF = -0.000000
LOG_LIKE DECREASED IN CHANGE_THETA DIFF = -0.000000
-146.86
-146.86
D2S54
68 65
X X
LOG_LIKE DECREASED IN CHANGE_THETA DIFF = -0.000000
-97.14
-97.14
D2S6
68 65
X X X
LOG_LIKE DECREASED IN CHANGE_THETA DIFF = -0.000000
-163.43
-162.99
-163.05
D2S62
68 65
X X X
-126.52
-126.35
-127.86
D2S70
68 65
X X X
LOG_LIKE DECREASED IN CHANGE_THETA DIFF = -0.000000
-139.38
-137.12
-137.12
D2S48
68 65
X X X
LOG_LIKE DECREASED IN CHANGE_THETA DIFF = -0.000000
-132.28
-132.11
-133.21
D2S45
68 65
X X
-129.07
-128.68