dat_file  chr2.dat *
gen_file  chr2.gen *
ord_file  chr2.ord *
nb_our_alloc  3000000 *
SEX_EQ  1 *
TOL  0.010000 *
PUK_NUM_ORDERS_TOL  6 *
PK_NUM_ORDERS_TOL  8 *
PUK_LIKE_TOL  2.000 *
PK_LIKE_TOL  2.000 *
use_ord_file  0 *
write_ord_file  1 *
use_haps  1 *
ordered_loci 22 55 68 13 77 1 49 20 69 10 33 24 59 26 28 40 6 66 17 70 56 54 50 44 65 42 5  *
inserted_loci *


hap_sys0 75 73 72 76 *
hap_sys0 64 63 *
hap_sys0 54 53 *
hap_sys0 44 45 *
hap_sys0 42 41 *
hap_sys0 40 39 *
hap_sys0 24 23 *
hap_sys0 1 3 *
hap_sys0 0 2 4 *
END