chromosome 2
100800 bytes allocated in orders_morecore
3024000 bytes allocated in morecore
Option chosen: fixed
Current values for parameters:
par_file = chr2.par
dat_file = chr2.dat
gen_file = chr2.gen
ord_file = chr2.ord
nb_our_alloc = 3000000 [# bytes reserved for our_alloc]
SEX_EQ = 1 [0 = sex specific analysis, 1 = sex equal]
TOL = 0.010000
PUK_NUM_ORDERS_TOL = 6
PK_NUM_ORDERS_TOL = 8
PUK_LIKE_TOL = 2.000
PK_LIKE_TOL = 2.000
use_ord_file = 0
write_ord_file = 0
use_haps = 1
Haplotyped system (distances forced to 0.0):
0 CRYG1-5 2 CRYG1-5_2 4 CRYG1-5_3
Haplotyped system (distances forced to 0.0):
1 D2S54 3 D2S54_2
Haplotyped system (distances forced to 0.0):
24 D2S38_2 23 D2S38
Haplotyped system (distances forced to 0.0):
40 D2S5_2 39 D2S5
Haplotyped system (distances forced to 0.0):
42 D2S1_2 41 D2S1
Haplotyped system (distances forced to 0.0):
44 TPO 45 TPO_2
Haplotyped system (distances forced to 0.0):
54 APOB_2 53 APOB
Haplotyped system (distances forced to 0.0):
64 D2S61_2 63 D2S61
Haplotyped system (distances forced to 0.0):
75 TGFA_3 73 TGFA_2 72 TGFA
76 TGFA_4
N.B. Only the first locus in each set is retained in the orders
objects, but the remaining loci are used in all likelihood calculations.
Sex_averaged map (recomb. frac., Kosambi cM):
21 D2S40 0.0
0.24 26.2
55 D2S51 26.2
0.11 10.9
61 LCT 37.1
0.06 6.2
68 D2S44 43.3
0.04 3.8
77 Prot_C/pcr 47.2
0.04 3.7
1 D2S54 50.8
0.00* 0.0
3 D2S54_2 50.8
0.06 5.8
49 LCO 56.6
0.04 4.4
20 D2S41 61.0
0.04 3.8
69 D2S43 64.8
0.12 12.0
10 D2S25 76.7
0.03 2.9
33 D2S62 79.6
0.02 1.9
24 D2S38_2 81.5
0.00* 0.0
23 D2S38 81.5
0.12 12.4
59 D2S45 94.0
0.10 9.8
26 D2S30 103.7
0.08 7.9
28 D2S31 111.7
0.03 3.1
40 D2S5_2 114.7
0.00* 0.0
39 D2S5 114.7
0.06 5.7
31 D2S28 120.5
0.17 17.5
66 D2S6 138.0
0.03 3.0
17 D2S19 141.0
0.10 10.3
70 D2S46 151.3
0.09 9.5
56 D2S48 160.8
0.12 12.2
54 APOB_2 172.9
0.00* 0.0
53 APOB 172.9
0.06 6.2
50 D2S70 179.1
0.35 44.1
44 TPO 223.3
0.00* 0.0
45 TPO_2 223.3
0.03 3.2
65 D2S47 226.5
0.01 1.4
42 D2S1_2 227.9
0.00* 0.0
41 D2S1 227.9
0.04 3.7
5 ACP1 231.6
* denotes recomb. frac. held fixed in this analysis
log10_like = -1032.442