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ALIGNMENT LOCAL |
| Program name | Description |
|---|---|
| matcher | Finds the best local alignments between two sequences |
| seqmatchall | Does an all-against-all comparison of a set of sequences |
| supermatcher | Finds a match of a large sequence against one or more sequences |
| water | Smith-Waterman local alignment |
| wordmatch | Finds all exact matches of a given size between 2 sequences |